Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12059258 chr1:16327614 G/A 2.29E-5 494 31.38 27.13 67.52 KM Plot
PRAD rs12060374 chr1:1129789 G/C 1.4E-5 485 31.28 29.1 24.75 KM Plot
PRAD rs12060422 chr1:1129920 G/A 1.4E-5 485 31.28 29.1 24.75 KM Plot
PRAD rs12061357 chr1:1127330 C/T 1.59E-5 480 31.37 29 24.75 KM Plot
PRAD rs12062042 chr1:1131236 G/T 1.36E-5 488 31.27 29 24.75 KM Plot
PRAD rs12063897 chr1:1122539 A/G 1.48E-5 483 31.3 29.05 24.75 KM Plot
PRAD rs12065096 chr1:202730145 C/T 5.26E-6 493 30.87 29.17 37.17 KM Plot
PRAD rs12065129 chr1:1125220 C/T 1.43E-5 484 31.3 29.1 24.75 KM Plot
PRAD rs12068573 chr1:16326604 C/T 2.42E-5 493 31.9 26.03 67.52 KM Plot
PRAD rs12070340 chr1:202770283 T/C 5.26E-6 493 30.87 29.17 37.17 KM Plot
PRAD rs12074557 chr1:202782257 G/A 7.21E-6 485 30.8 32.63 37.17 KM Plot
PRAD rs12083572 chr1:16347542 C/A 2.36E-5 493 31.63 26.03 67.52 KM Plot
PRAD rs12088360 chr1:202772685 C/G 5.41E-6 491 30.93 30.77 37.17 KM Plot
PRAD rs12093894 chr1:202686921 G/A 9.91E-6 493 30.93 29.5 27.92 KM Plot
PRAD rs12095644 chr1:16327566 A/G 2.29E-5 494 31.38 27.13 67.52 KM Plot